
Zucchini enchiladas transform traditional Mexican comfort food into a lighter, veggie-forward meal without sacrificing an ounce of flavor. By swapping tortillas for thin ribbons of fresh zucchini, you get all the cheesy, saucy goodness of classic enchiladas with a fraction of the carbs. The tender zucchini wraps around succulent shredded chicken, creating perfect little bundles that bake until the cheese turns golden and bubbly. This dish proves that healthy adjustments can actually enhance a recipe rather than diminish it – the zucchini adds a garden-fresh element that complements the savory filling beautifully.
Last summer when my garden was overflowing with zucchini, I started experimenting with different ways to use it beyond the typical zucchini bread. The first time I served these enchiladas, my husband was skeptical about missing his beloved tortillas. By the end of dinner, he was reaching for seconds and asking when we could have them again! Even my tortilla-obsessed children cleaned their plates, which is nothing short of a miracle in our household.
Zucchini Enchiladas Ingredients
- 4-5 medium zucchini: Look for straight, firm zucchini of similar width for the most uniform "tortillas." The freshest zucchini will have a slight sheen to the skin and feel heavy for their size.
- 3 cups shredded chicken: Rotisserie chicken works beautifully here, saving precious prep time while adding rich flavor. The dark meat particularly adds moisture that keeps the filling from drying out during baking.
- 1 medium onion, finely diced: Yellow or white onions provide the perfect background flavor; sweet onions can work too but will add a hint of additional sweetness to the dish.
- 3 garlic cloves, minced: Fresh garlic provides aromatic depth that powdered simply can't match. Choose firm heads with tight, papery skin for the best flavor.
- 2 cups enchilada sauce: Whether store-bought or homemade, look for a sauce with balanced acidity and heat. The sauce should coat the back of a spoon but not be overly thick.
- 2 cups shredded cheese: A Mexican blend offers convenience, but equal parts sharp cheddar and Monterey Jack create the perfect balance of flavor and meltability. Freshly shredded cheese melts more smoothly than pre-packaged.
- 1 tablespoon olive oil: Use a good quality extra virgin olive oil for sautéing; its flavor complements the Mexican spices beautifully.
- 1 teaspoon cumin: Earthy, warm cumin forms the backbone of the seasoning profile, adding authentic Mexican character to the filling.
- 1 teaspoon chili powder: This adds color and mild heat; adjust according to your spice preference or use smoked varieties for additional depth.
- Salt and pepper to taste: Diamond Crystal kosher salt and freshly ground black pepper allow you to control seasoning precisely.

I'm particularly fussy about the enchilada sauce in this recipe. After trying numerous store brands, I've found that Frontera or Siete Foods offer the most balanced flavor profiles. When I have extra time, I make a batch of homemade sauce using dried chilies, which elevates this dish to restaurant quality.
How to Make Zucchini Enchiladas
- Step 1:
- Preheat your oven to 375°F (190°C) and set out all ingredients so they're ready to use. Organization is key to this recipe flowing smoothly, as the assembly process goes quickly once you've prepared the components. Take a moment to position your work area with space for the zucchini preparation, filling, and assembly.
- Step 2:
- Begin by preparing the chicken filling. Heat olive oil in a large skillet over medium heat until it shimmers slightly. Add the diced onions and cook until they become translucent and soft, about 3-4 minutes. This slow cooking develops sweetness in the onions that balances the savory elements. Stir occasionally to ensure even cooking.
- Step 3:
- Add minced garlic to the softened onions and cook for an additional 30 seconds until fragrant. The garlic should become aromatic but not brown, which would create bitterness. Keep the pan moving during this brief cooking period to prevent burning.
- Step 4:
- Stir in cumin, chili powder, salt, and pepper, toasting the spices briefly to release their essential oils and deepen their flavors. You'll know they're ready when you can smell their warm, aromatic notes rising from the pan, usually after about 30 seconds of stirring.
- Step 5:
- Add the shredded chicken to the skillet, mixing thoroughly to coat with the seasoned onion mixture. The chicken should be well-distributed throughout the aromatics. Break up any larger chunks of chicken to ensure even flavor distribution and easier rolling later.
- Step 6:
- Pour in ½ cup of enchilada sauce, stirring to combine everything into a cohesive filling. The mixture should be moist but not swimming in sauce. Allow it to simmer for 2-3 minutes, letting the chicken absorb the flavors of the sauce and spices. Remove from heat and set aside while you prepare the zucchini.
- Step 7:
- Using a Y-shaped vegetable peeler or mandolin (on the thinnest setting), carefully slice the zucchini lengthwise into thin, wide strips. The ideal thickness is about 1/16 inch – thin enough to roll without breaking but sturdy enough to hold the filling. Work slowly and maintain consistent pressure for uniform strips.
- Step 8:
- Lay the zucchini strips on paper towels and gently press another layer of paper towels on top to remove excess moisture. This crucial step prevents your finished dish from becoming watery. Let them sit for about 5 minutes, changing the paper towels if they become very wet.
- Step 9:
- To assemble each enchilada, lay out three strips of zucchini slightly overlapping to create one wider "tortilla." The overlapping edges should be about ¼ inch to ensure they hold together when rolled. Position them horizontally in front of you for easiest rolling.
- Step 10:
- Spoon approximately 1-2 tablespoons of the chicken mixture onto one end of the zucchini strips. Place the filling about an inch from the edge closest to you, forming a compact line across the width of your zucchini "tortilla."
- Step 11:
- Carefully roll the zucchini away from you, tucking the edge under the filling and continuing to roll until you have a neat cylinder. The process is similar to rolling sushi, maintaining gentle tension throughout to keep the roll compact. Place seam-side down in a greased 9x13 baking dish.
- Step 12:
- Repeat the process with remaining zucchini strips and filling until you've filled the baking dish, arranging the rolls snugly against one another. They should fit comfortably without being crushed, supporting each other to prevent unraveling during baking.
- Step 13:
- Pour the remaining enchilada sauce evenly over the rolls, ensuring each one gets coated. The sauce should reach about halfway up the sides of the rolls without completely submerging them. This balance provides flavor while preventing sogginess.
- Step 14:
- Sprinkle the shredded cheese generously across the top, covering the rolls completely. The cheese will form a golden, bubbly crust that helps hold everything together when serving. For best results, make sure the cheese extends to the edges of the dish.
- Step 15:
- Bake in the preheated oven for 25-30 minutes until the cheese is melted and begins to brown at the edges and the sauce is bubbling. The zucchini should be tender but still hold its shape when pierced with a fork. If the cheese browns too quickly, tent loosely with foil.
- Step 16:
- Remove from the oven and let stand for 5 minutes before serving. This brief rest allows the rolls to set slightly, making them easier to transfer to plates while the flavors continue to meld. Garnish with fresh cilantro, sliced jalapeños, or avocado just before serving.
The Art of Zucchini Selection
Not all zucchini are created equal when it comes to making these enchiladas. Look for medium-sized specimens with straight shapes rather than curved ones. The ideal zucchini should be 7-8 inches long and about 2 inches in diameter. Smaller zucchinis tend to have fewer seeds and firmer flesh, making them easier to slice thinly and roll without breaking.
The skin should be vibrant green and free from blemishes or soft spots. Give it a gentle squeeze – it should feel firm but not rock hard. Overly mature zucchini develop tougher skins and watery, seed-filled interiors that won't hold up well in this recipe. If you're growing your own, harvest them when they reach the perfect size rather than letting them grow too large.
When slicing, start from the stem end and work toward the blossom end for the most consistent strips. The first few strips from the outside edge will be mostly skin and too narrow – save these for another use like stir-fries or frittatas. The widest strips from the middle section are perfect for your enchiladas.

The Perfect Enchilada Sauce
While store-bought enchilada sauce works perfectly well for this recipe, making your own elevates the dish to new heights. A simple homemade version begins with toasting dried chilies (like guajillo or ancho) until fragrant, then simmering them with sautéed onions, garlic, cumin, oregano, and broth until soft. Blend until smooth, strain out any tough bits, and simmer to your desired thickness.
The beauty of homemade sauce lies in customization – adjust the heat level with different chili varieties, add a touch of cinnamon for warmth, or incorporate a spoonful of unsweetened cocoa powder for richness. The sauce should have a balance of earthy, smoky, and tangy notes with just enough body to cling to the zucchini rolls without being pasty.
If you do opt for store-bought sauce, doctor it up with fresh lime juice, a dash of cumin, or a spoonful of adobo sauce from canned chipotles to add personality. Remember that the sauce provides most of the moisture in this dish, so its quality directly affects the final result.
Protein Variations to Try
While shredded chicken creates a classic enchilada filling, this recipe welcomes experimentation with different proteins. For a vegetarian version, replace the chicken with a mixture of black beans and corn, seasoned generously and perhaps bulked up with cooked quinoa or riced cauliflower for texture.
Ground beef or turkey works beautifully when browned with the onions and seasonings. For a more luxurious version, try slow-cooked and shredded pork shoulder or beef chuck, which brings incredible depth to the filling. Seafood lovers might enjoy a filling of sautéed shrimp or flaked white fish mixed with a touch of cream cheese for richness.
For those eating plant-based, crumbled tempeh or firm tofu makes an excellent protein base – just be sure to drain it well and season assertively, as these proteins readily absorb the flavors they're cooked with. Whatever protein you choose, ensure it's not too wet before filling the zucchini to prevent soggy enchiladas.
I discovered the moisture issue the hard way during my first attempt at this recipe. I skipped the paper towel step, thinking it wouldn't matter much, and ended up with a watery mess in the bottom of my baking dish. Now I sometimes even salt the zucchini lightly and let it sit for 10 minutes before patting dry – this draws out even more moisture and seasons the zucchini at the same time. The difference in the final texture is remarkable.
The true beauty of this dish lies in its adaptability. It satisfies those craving traditional enchiladas while providing a lighter alternative that doesn't feel like a compromise. I've served these at dinner parties where guests had no idea they were eating something "healthy" until I mentioned the zucchini swap – they were too busy enjoying the flavors to notice the missing tortillas. It's become my go-to recommendation for anyone looking to reduce carbs without giving up their favorite comfort foods.
Frequently Asked Questions
- → Can I make these vegetarian?
- Absolutely! Replace the chicken with black beans, pinto beans, or a mixture of sautéed vegetables like bell peppers and corn.
- → How do I prevent the zucchini from becoming too watery?
- After slicing the zucchini, lay the strips on paper towels and sprinkle with a little salt. Let them sit for 10 minutes to draw out excess moisture before assembling.
- → Can I make my own enchilada sauce?
- Yes! Homemade enchilada sauce is easy to make with tomato sauce, chili powder, cumin, garlic, and other spices simmered together.
- → How thin should I slice the zucchini?
- Aim for slices about 1/8-inch thick. Using a Y-peeler helps create uniform, thin strips that are pliable enough to roll.
- → Can I make these ahead of time?
- You can assemble these up to a day ahead and refrigerate. Add an extra 5-10 minutes to the baking time if cooking from cold.